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Overview

Omicsoft is the leading provider of Next Generation Sequencing, Cancer Genomics, Immunology, and Bioinformatics solutions for Next Generation Sequencing Data and Gene Expression Analysis.

Exciting Updates and Latest News

Keeping you up-to-date with the latest in NGS, Bioinformatics Analysis, and cancer genomics with blogs on Array Suite, OncoLand (TCGA and more), ImmunoLand, and more.

[New Feature] Geneset Analysis Updates: Enrichment Score, Volcano Plot and Summary Bar Plot

Vivian Zhang

Early this fall, Omicsoft released the new Geneset Analysis functonality (See webinar  Announcing GeneSet Analysis Functionality, integrated with Omicsoft’s Land databases and blog post Geneset Analysis Functionality: Integrated With Omicsoft Land Databases.). It helps users to identify comparisons containing similar gene set enrichment from both tens of thousands of gene sets in the Lands as well as customer gene sets, with directional results. Geneset Analysis is under active development, and we would like to update you with a few new features since its release.

GeneSet Analysis result

GeneSet Analysis result

 

Gene Set Enrichment Analysis Report
 

The Geneset Enrichment Analysis Report reports p-value, enrichment score, direction of enrichment and other annotation information:

Geneset Enrichment Analysis Report

Geneset Enrichment Analysis Report

 

Enrichment Volcano Plot

 

Enrichment Volcano Plot is a plot of Enrichment Score vs P-Value. The Enrichment score for the gene set is the degree to which this gene set is overrepresented at the top or bottom of the ranked list of genes in the comparisons. The plot helps to visualize potential gene sets of interest to further research on, with indication of enrichment directions. 

Enrichment Volcano Plot

Enrichment Volcano Plot

Summary Bar Plot

The Summary Bar Plot helps to visualize the number of overlapped genes and dynamically links to those genes with details in details window.

Summary Bar Plot

Summary Bar Plot

 

If you an Omicsoft Land customer, give it a try with the latest Array Suite version. Let us know any comments or suggestions you have!