Early this fall, Omicsoft released the new Geneset Analysis functonality (See webinar Announcing GeneSet Analysis Functionality, integrated with Omicsoft’s Land databases and blog post Geneset Analysis Functionality: Integrated With Omicsoft Land Databases.). It helps users to identify comparisons containing similar gene set enrichment from both tens of thousands of gene sets in the Lands as well as customer gene sets, with directional results. Geneset Analysis is under active development, and we would like to update you with a few new features since its release.
Gene Set Enrichment Analysis Report
The Geneset Enrichment Analysis Report reports p-value, enrichment score, direction of enrichment and other annotation information:
Enrichment Volcano Plot
Enrichment Volcano Plot is a plot of Enrichment Score vs P-Value. The Enrichment score for the gene set is the degree to which this gene set is overrepresented at the top or bottom of the ranked list of genes in the comparisons. The plot helps to visualize potential gene sets of interest to further research on, with indication of enrichment directions.
Summary Bar Plot
The Summary Bar Plot helps to visualize the number of overlapped genes and dynamically links to those genes with details in details window.
If you an Omicsoft Land customer, give it a try with the latest Array Suite version. Let us know any comments or suggestions you have!