PRICING & INQUIRIES

For pricing and inquiries, send an email to sales@omicsoft.com.

5001 Weston Parkway, Suite 201
Cary, NC 27513
US

888-259-6642

Overview

Omicsoft is the leading provider of Next Generation Sequencing, Cancer Genomics, Immunology, and Bioinformatics solutions for Next Generation Sequencing Data and Gene Expression Analysis.

Exciting Updates and Latest News

Keeping you up-to-date with the latest in NGS, Bioinformatics Analysis, and cancer genomics with blogs on Array Suite, OncoLand (TCGA and more), ImmunoLand, and more.

[Land Tutorial] Getting Started With DiseaseLand (ImmunoLand And CVMLand) II

Vivian Zhang

Last time, we introduced  some of the basic views in DiseaseLand. In this article, we would like to introduce you to some advanced functionality: SampleSets and GeneSets. 

 

The SampleSet is powerful concept/tool that allow users to create custom sample groupings, based on data in the Land or imported tables. This video tutorial demonstrates several ways to build a SampleSet from data using selection and filters, then uses SampleSets in Land Analytics to scan the entire DiseaseLand to discover differential splicing.

Grouping lesional vs non-lesional Psoriasis samples in ImmunoLand (DiseaseLand). 

Grouping lesional vs non-lesional Psoriasis samples in ImmunoLand (DiseaseLand). 

Serpinb7 Transcript Expression grouped by lesional vs. non-lesional samples. 

Serpinb7 Transcript Expression grouped by lesional vs. non-lesional samples. 

With the newly created sampleset, users can visualize isoform differential expression at the transcript level in the Genome Browser:

Differential expression of Serpinb 7 in lesional vs. non-lesional samples.

Differential expression of Serpinb 7 in lesional vs. non-lesional samples.

3. GeneSets

Besides the SampleSet tool, GeneSets are a powerful tool for grouping and comparing genes, including members of a gene family, a pathway, or co-regulated genes. These GeneSets can be used to discover DiseaseLand studies that share "genetic signatures" of common up- or down-regulated genes with your GeneSet.

After adding GeneSet Some_IBD_Genes, the geneset becomes available for search.

After adding GeneSet Some_IBD_Genes, the geneset becomes available for search.

With the created geneset, users can visualize and perform analyses on the set of genes. 

Heatmap of Comparison for GeneSet Some_IBD_Genes.

Heatmap of Comparison for GeneSet Some_IBD_Genes.

 

Stay tuned for a DiseaseLand comparison views tutorial!