Next Generation Sequencing Alignment  |
| Whitepaper discussing the technique of aligning next generation sequencing (HTS) data. |
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| Robust High Dimensional Linear Modeling |
| Whitepaper discussing the technique of robust high dimensional linear modeling - used for the Linear Models contained within Array Studio. |
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| Affymetrix CNV Analysis |
| Whitepaper discussing the techniques used for genotype calling, signal extraction for Log2Ratio and B-Allele Frequency, and segmentation for Affymetrix Copy Number analysis in Array Studio. Also applies to genotype calling for Affymetrix SNP chips. Segmentation method applies to all copy number segmentation performed by Array Studio (regardless of platform). |
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| Exon Array Detection P-Value Calculation |
| Whitepaper discussing the calculation of detection p-value for the Affymetrix ExonArray platform. |
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| Integration of CNV and Microarray Data |
| Whitepaper discussing the techniques and methods used for the integration of Copy Number and Microarray (Gene Expression) data in Array Studio. |
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| R Integration |
| Whitepaper discussing the requirements and methods used to integrate R into Array Studio, along with a few examples. |
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| Taqman Specifications |
| Whitepaper discussing the specifications for the import and normalization of Taqman/RT-PCR data in Array Studio. |
