Videos showing how to use OncoLand (TCGA data). Understand how to explore the TCGA dataset easily using Omicsoft's tools. Includes a number of video how-to's for searching, analyzing, and visualizing The Cancer Genome Project data.
TCGA-Land: Oncology Integration Made Easy
Search gene(s) across tumor types and visualize multiple data types
Expression of my gene(s) across Tumor Types and Sample Type?
Which specific transcripts are expressed in my gene or gene of interest?
Are there any splice variants in my gene of interest across sample types or tumor types?
Is my gene or genes of interest amplified or deleted in a particular tumor type?
Search for and display gene fusions of interest. Examine these fusions in the Genome Browser
What is the mutation frequency (somatic mutation) in my gene or genes of interest across tumor type?
Generate the mutation status of a gene or genes and correlate to gene expression.
Download data to Array Studio for more complex analysis (or to export to outside tools)
Walks through the process of using Land Analytics to determine the frequency of insertions/deletions and stopgain/stoploss mutations across the different tumor types in TCGA